HsaEX6031631 @ hg38
Exon Skipping
Gene
ENSG00000162624 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
Coordinates
chr1:75136603-75141106:+
Coord C1 exon
chr1:75136603-75136689
Coord A exon
chr1:75137100-75137261
Coord C2 exon
chr1:75140985-75141106
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCCTCGCGGTTTCCTGCAGGTG
3' ss Score
9.51
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGTCAGGGGCTCATGTCAGAGGAGTGCGGGCGGACTACAGCCCTGGCGGCCGGGAGGACTCGCAAAGGCGCCGGGGAAGAGGGACTG
Seq A exon
GTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGTGTGTGTGCAACAGTTGCGGCCTGGAGATCGTGGACAAATACCTTCTCAAG
Seq C2 exon
GTGAATGACCTATGCTGGCATGTCCGGTGTCTCTCCTGCAGTGTTTGCAGAACCTCCCTAGGAAGGCACACCAGCTGTTATATTAAAGACAAAGACATTTTCTGCAAACTTGATTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162624-'8-6,'8-3,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=25.9)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGGGCTCATGTCAGAG
R:
AATCAAGTTTGCAGAAAATGTCTTTG
Band lengths:
202-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains