MmuEX0026400 @ mm10
Exon Skipping
Gene
ENSMUSG00000096225 | Lhx8
Description
LIM homeobox protein 8 [Source:MGI Symbol;Acc:MGI:1096343]
Coordinates
chr3:154324542-154328441:-
Coord C1 exon
chr3:154328355-154328441
Coord A exon
chr3:154328005-154328166
Coord C2 exon
chr3:154324542-154324663
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGCTCGGCTGTTCCTGCAGGTG
3' ss Score
10.14
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTG
Seq A exon
GTGAATCCCGAGGGAGCCGGGGACGAGGACTCCTGCTCCTCCTCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCGCCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCCTCAAG
Seq C2 exon
GTGAATGACTTATGCTGGCATGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGTCCCTGGGAAGGCACACGAGCTGCTACATTAAGGATAAAGACATTTTCTGTAAACTCGATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096225-'3-5,'3-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.111 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=25.9)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCATGTCGGAGGAGT
R:
TGTCTTTATCCTTAATGTAGCAGCT
Band lengths:
178-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types