RnoEX0049905 @ rn6
Exon Skipping
Gene
ENSRNOG00000028348 | Lhx8
Description
LIM homeobox 8 [Source:RGD Symbol;Acc:1308749]
Coordinates
chr2:260592739-260596777:-
Coord C1 exon
chr2:260596632-260596777
Coord A exon
chr2:260596273-260596434
Coord C2 exon
chr2:260592739-260592860
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGCTCGGCTATTCCCGCAGGTG
3' ss Score
9.55
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGTGCTCGCCCCGGGCTCCTGACCCGCGTCTTCCTGCCTTCCCGCTCTCGCGGCGCAGTGCCCCGGGCTCATGTCGGAGGAGTGCGGGCGGCCTGCAGCCCTGGCGGCCGGGAGGACCCGCAAAGGCGCTGGGGAAGAAGGACTG
Seq A exon
GTGAATCCCGAGGGAGCCGGGGACGAGGACTCCTGCTCCTCCTCGGCCCCGCTTTCCCCGTCGTCCTCGCCCCAGTCCATGGCCTCGGGCTCCGTGTGCCCACCAGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATTGTGGACAAATACCTCCTCAAG
Seq C2 exon
GTGAATGACTTATGCTGGCATGTCCGCTGTCTCTCCTGCAGTGTCTGCAGAACGTCCCTGGGAAGGCACACAAGCTGTTACATTAAGGATAAAGACATTTTCTGTAAACTCGATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028348_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=25.9)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGACCCGCGTCTTCC
R:
CCTTAATGTAACAGCTTGTGTGCC
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]