GgaEX1033354 @ galGal3
Exon Skipping
Gene
ENSGALG00000011369 | F1P4G9_CHICK
Description
NA
Coordinates
chr8:30510076-30513707:+
Coord C1 exon
chr8:30510076-30510226
Coord A exon
chr8:30510509-30510667
Coord C2 exon
chr8:30513586-30513707
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCCGTGCGCTTCCCCGCAGGAG
3' ss Score
10.74
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CGAGGTTCCCGGAGCAGCCTCGTGGCGCCCCGCCGCCCTTCGCGGAGCTGGTATGCGGTAGGGCAGGGCCATGTATTGGAAGAGCGACCCGATGTTCGTGTGCAGGCTGGAGGATAAGGACCTGCCCGCGCTCGGCGACACCTCGGAGAAG
Seq A exon
GAGAGCCCCGCGGCGGCCGACGAGGACTCCTGCTCTTCCTCCGCCGCTCTATCGCCCTCCTCTTCGCCGCGGTCCATGGCCTCGGGCTCCGGCTGCGCCCCAAGCAAGTGCGTGTGCAGCAGCTGCGGCCTGGAGATCGTGGACAAGTACCTGCTGAAG
Seq C2 exon
GTGAACGACCTCTGCTGGCACGTTCGCTGTCTCTCGTGCAGTGTTTGCAGAACGTCCCTCGGAAGGCACACCAGCTGCTACATCAAAGATAAAGATATCTTCTGCAAACTTGATTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011369-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=26.4)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTTCCCGGAGCAGC
R:
TATCTTTGATGTAGCAGCTGGTGT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]