DreEX6049092 @ danRer10
Exon Skipping
Gene
ENSDARG00000042145 | lhx8b
Description
LIM homeobox 8b [Source:ZFIN;Acc:ZDB-GENE-081105-153]
Coordinates
chr8:17890781-17892768:-
Coord C1 exon
chr8:17892447-17892768
Coord A exon
chr8:17890990-17891130
Coord C2 exon
chr8:17890781-17890902
Length
141 bp
Sequences
Splice sites
3' ss Seq
TATAGCATTCATTCTCACAGAGC
3' ss Score
5.97
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTTGGGGTGAAGGCATTATGTGTGAACCGTTTCCGAATCCCTAATGCGGATTTCAAGTGCATAATACACATAACCATTGGTCCAAGAGTTGAGCGTGTTTTACTAATGACTAAGATTCTGGAAGTCTAAATGTAGAAAATTTATTTTGGCGATTGCGGTTGTCATGGTGAAAAGACAAGTGGATGATGTTTATGGGATGGAGCGCGCACATTTAAAGGGTGTTTCGGTGCGAGATTTTGGAAACCGAAGCGCTTTCACTACCGACATGAACGCGAGACGCTGTGAGGATTTTACCAGAGAACTTTCAAGCAACATTTGTATG
Seq A exon
AGCTTACCGGAAGCAAAGAATGGCCGATCTGATCCGGCTTCTCCATCTGCTTTACCTGAAACAATGGCATCTGATGCTTTTCAAGGCAAAGCAGTTTGCACAAGGTGTAGAGAGCACATCCTAGACAGGCATCTGCTTAAG
Seq C2 exon
GTGAATGACATGTGCTGGCATGCGAGATGCCTTTCATGCAGTGTGTGTCAGACCACCTTGAGCGAACAGACAACCTGCTATGTCCGAGAGCGTGAGATTTTCTGCAAGCTACATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042145-'0-4,'0-2,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=29.8)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGGCGATTGCGGTTGTC
R:
GCTCAAGGTGGTCTGACACAC
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]