BtaEX0020190 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019192 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
Coordinates
chr3:69909639-69916293:-
Coord C1 exon
chr3:69916213-69916293
Coord A exon
chr3:69913607-69913768
Coord C2 exon
chr3:69909639-69909760
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCCTCGTGGCTTCCTGCAGGTG
3' ss Score
9.45
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGTATTGGAAAAGCGATCAGATGTTTGTGTGTAAACTAGAAGAAAAGGACGTGCTGGAGCTGGCAGTTCCCCTTGAGAAG
Seq A exon
GTGAGCCCCGAGGGAGTGGGGGACGAGGACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGTCTGCCCTCCTGGCAAGTGTGTGTGCAGCAGCTGCGGCCTGGAGATCGTGGACAAGTACCTTCTCAAG
Seq C2 exon
GTGAACGACCTGTGCTGGCATGTCCGGTGTCTCTCCTGCAGCGTCTGCAGGACCTCCTTAGGAAGGCACACCAGCTGTTATATTAAAGACAAAGACATTTTCTGCAAACTTGATTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019192_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PU(24.1=25.9)
C2:
PF0041217=LIM=FE(69.0=100)
Main Skipping Isoform:
ENSBTAT00000025544fB3818
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATTGGAAAAGCGATCAGATGT
R:
TCAAGTTTGCAGAAAATGTCTTTGT
Band lengths:
194-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development