DreEX0043337 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2034732-2036774:+
Coord C1 exon
chr9:2034732-2034815
Coord A exon
chr9:2035421-2035472
Coord C2 exon
chr9:2036581-2036774
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCTCTGAAGGAG
3' ss Score
9.2
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGAACAAGTGATGGAAACGGAGACCTATAAAAATGCCAAGCTGATTCTTGAACGCTTTGACCCAGACTCAAAGAAGAAGCTT
Seq A exon
GAGTTAGAGACTCAACCCATTGGCCCGACTGCCACTCCAAGACAAGGCCAAG
Seq C2 exon
AGCTACGTCATCGGCTTGTGTCTCCTCGTCCCACTGGTCGTCCTCCTCCAGTCCCTGTACCTGGCCCGTCAGTCCCCGGCACGCCACTGTCCGCTCCAGGAGGACCACCTGAAAAAGGTCTGTCAGCCTCGACCCCGCAAGCTCTGATCAGGCGGCCCGGGACCCCGGCGGGCACACCGATTCCTGTGATGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=1.000 C2=0.988
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PD(14.3=71.4),PF074317=DUF1512=PD(30.0=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGATGGAAACGGAGACC
R:
GACTGGAGGAGGACGACCAG
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]