GgaEX6042252 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15887439-15892347:+
Coord C1 exon
chr7:15887439-15887519
Coord A exon
chr7:15887606-15887657
Coord C2 exon
chr7:15892123-15892347
Length
52 bp
Sequences
Splice sites
3' ss Seq
TATTTATAATTAATTGGCAGGAG
3' ss Score
3.39
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTTGAGGAAGTGATGGAGAAGGAAACTTACAAGACTGCTAAACTAATTCTTGAAAGGTTTGATCCAGATTCAAATGCAAAG
Seq A exon
GAGGCTGAACTGCCATCTGCTGGAACATCTGCAACCTCGAGACCTGGACAAG
Seq C2 exon
AAATTCGTCAGAGGACTGCAGCTCAAAGAAATGCTTCTACACCCACGCCTGCTACTCCTAAGCAAGGCTCTCCAAAATTGCTTGTTTCGTCAACACCGTCTCCCGATCTGCAGAGGGATGCATCTGCTCTTAGTGGACCACCAGAAAGAACCGCTGTGCCATCCTTGCAGTCAAATGTTCTACCGAGACGCCCTGGATCCCCTGCTACTTCAGTGCCTGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'17-15,'17-13,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGTGATGGAGAAGGA
R:
CTTGCTTAGGAGTAGCAGGCG
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]