HsaEX0034241 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176812208-176829317:-
Coord C1 exon
chr2:176829234-176829317
Coord A exon
chr2:176829100-176829151
Coord C2 exon
chr2:176812208-176812420
Length
52 bp
Sequences
Splice sites
3' ss Seq
AACATTATTATAATTGACAGGAG
3' ss Score
2.66
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTACAAGACGGCTAAATTAATTCTTGAAAGGTTTGATCCGGACTCAAAGAAAGCAAAG
Seq A exon
GAGTGTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAGACCTGGACAAG
Seq C2 exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCTGGTGGACCCCCAGAAAGGACTGTTACTCCAGCCCTATCATCAAATGTGTTACCAAGACATCTTGGATCCCCTGCTACTTCAGTGCCTGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PD(14.4=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCGGACTCAAAGAAAGCA
R:
GCAGAACTGTCCTTTGGTGGT
Band lengths:
140-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)