GgaEX6042252 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17499742-17504650:+
Coord C1 exon
chr7:17499742-17499822
Coord A exon
chr7:17499909-17499960
Coord C2 exon
chr7:17504426-17504650
Length
52 bp
Sequences
Splice sites
3' ss Seq
TATTTATAATTAATTGGCAGGAG
3' ss Score
3.39
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTTGAGGAAGTGATGGAGAAGGAAACTTACAAGACTGCTAAACTAATTCTTGAAAGGTTTGATCCAGATTCAAATGCAAAG
Seq A exon
GAGGCTGAACTGCCATCTGCTGGAACATCTGCAACCTCGAGACCTGGACAAG
Seq C2 exon
AAATTCGTCAGAGGACTGCAGCTCAAAGAAATGCTTCTACACCCACGCCTGCTACTCCTAAGCAAGGCTCTCCAAAATTGCTTGTTTCGTCAACACCGTCTCCCGATCTGCAGAGGGATGCATCTGCTCTTAGTGGACCACCAGAAAGAACCGCTGTGCCATCCTTGCAGTCAAATGTTCTACCGAGACGCCCTGGATCCCCTGCTACTTCAGTGCCTGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=1.000 C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGTGATGGAGAAGGA
R:
CTTGCTTAGGAGTAGCAGGCG
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]