RnoEX6017446 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61449370-61464250:-
Coord C1 exon
chr3:61464167-61464250
Coord A exon
chr3:61464029-61464080
Coord C2 exon
chr3:61449370-61449567
Length
52 bp
Sequences
Splice sites
3' ss Seq
AACATTATTGTAATTGACAGGAG
3' ss Score
3.98
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCAAAATTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
Seq A exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGCAACTGCAAAGCCAGGACAAG
Seq C2 exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCCCCAGCACCAGCAAACTCTAATCAGGGTCCTCCTCCACAAGTTCCAGTATCTCCTGGGCCATCAAAGGACGCTTCAGCTCCTGGGGGACCGCCAGAAAGGACTGTTGCTCCAGCCTTACCCAGGCGCCTTGGATCCCCTGCTACTTCAGTTCCTGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'16-12,'16-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGATCCAGACTCAAAGAAAGC
R:
TCCTTTGATGGCCCAGGAGAT
Band lengths:
135-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]