MmuEX6102218 @ mm9
Exon Skipping
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74375361-74386115:-
Coord C1 exon
chr2:74386032-74386115
Coord A exon
chr2:74385895-74385946
Coord C2 exon
chr2:74375361-74375558
Length
52 bp
Sequences
Splice sites
3' ss Seq
AACATTATTGTAATTGACAGGAG
3' ss Score
3.98
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCTAAGTTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
Seq A exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAAGCCAGGACAAG
Seq C2 exon
AGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCCCCAGCACCAGCAAGCTCTAGTCAGGGTCCTCCTCCACAAGGTCCAGTGTCTCCTGGGCCAGCGAAGGACGCTTCAGCTCCTGGGGGACCGCCAGAAAGAACTGTTGCTCCAGCCTTGCCCAGGCGCCTTGGATCCCCTGCTACTTCAGTTCCTGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'16-18,'16-16,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.978 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTGAAAGGTTTGATCCAGACT
R:
CAGGAGACACTGGACCTTGTG
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: