DreEX6020736 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10618402-10620460:-
Coord C1 exon
chr6:10620377-10620460
Coord A exon
chr6:10620231-10620282
Coord C2 exon
chr6:10618402-10618614
Length
52 bp
Sequences
Splice sites
3' ss Seq
TGTATGATTTGTCTTTACAGGAA
3' ss Score
10.38
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTTGAGGAGGTGATGGAAACGGAGACCTACAAAAATGCTAAGCTCATACTGGAGAGATTTGATCCTGAGTCTAAAAAGAAAGCA
Seq A exon
GAAGCAGAAGCCACTCCAGTCAGACCCCACATGACCCCTAGACCAGGACAAG
Seq C2 exon
AGCTACGGCAGAGGCATATTGCCATGGCTACTCCAGGCCCAGTACTCGGCCCTATGTCTCCGGGAACCACACCTCTCCGTACCGCCCCAGGAGGACCTCCAGAGAAAGGGTTAGCTGGGTCTGCATCCACCCCTGCTGGAGCCAGTCAAGCAGAAACACCACAACAAATGATGAGAAGAAGCATGAATCCATATTCTCCAGGACCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'12-10,'12-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PD(14.3=71.4),PF110263=DUF2721=PD(4.0=17.9),PF060117=TRP=PD(0.9=3.6),PF074317=DUF1512=PD(30.0=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGATGGAAACGGAGACCT
R:
TGTGGTTCCCGGAGACATAGG
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]