DreEX0043704 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36650586-36663121:+
Coord C1 exon
chr9:36650586-36650786
Coord A exon
chr9:36658482-36658727
Coord C2 exon
chr9:36662924-36663121
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTCTGTTTCAGAGA
3' ss Score
12.56
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GGAAGTGTATCAGCAAGAGCTGGGTGTGTGACGGGGACGACGACTGTGAGGACCGTTCTGATGAAGAGTCGTGTGTGTCTTCCATCTGCAAGCCACCGACTCAGCCCTGCGCCAATGACTCCAGCATCTGTCTGCCCCAAAACAAGATCTGTGACGGGAGGATGGACTGCGCTGACCGCTCCGATGAAGGGCCTTTCTGTG
Seq A exon
AGAGGTGTTTACAGGGTAATGGAGGCTGCAGTCACCAGTGTTCAGTGATCCCCAGCAAAGGGGTGGTGTGTTCATGTCCCGCTGGACTCCATCTTGGCTCTGACAACCGAACATGTGAAGCGGTGGACTATTGCTCCGCTCACCTCAAGTGCAGTCAAATATGCGAACAGCATAAAACTACTGTCAAATGCTCCTGTTATCCTGGCTGGAGGCTGGATGCAGATGGAGAGAGCTGCCACAGCACAG
Seq C2 exon
ATCCCTTTGAGGCTTTTGTGATCTTCTCCATCCGGCATGAGATTAGACGAATTGATCTTCATAAACACGACTACAGCCTGCTTGTGCCCGGCCTGCGCAACACCATTGCTCTTGACTTCCACTTCAGCCACAGTCTGCTCTACTGGACCGATGTGGTGGAGGATAAGATCTATCGGGGAAAGCTCTCAGAGACCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(61.5=35.8),PF0005713=Ldl_recept_a=PU(90.7=58.2)
A:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=45.1),PF146701=FXa_inhibition=WD(100=42.7)
C2:
PF0005812=Ldl_recept_b=PU(46.7=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGTGAGGACCGTTCTGA
R:
GAGCAGACTGTGGCTGAAGTG
Band lengths:
301-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]