GgaEX6043154 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33630064-33635778:-
Coord C1 exon
chr7:33635578-33635778
Coord A exon
chr7:33634383-33634628
Coord C2 exon
chr7:33630064-33630261
Length
246 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCATGTTCTTTCAGATG
3' ss Score
11.44
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAGATGCATTAGCAAAGCGTGGCTATGTGATGGCGATATTGATTGTGAGGATCAGTCTGATGAGGATAATTGCGAGGGCTATATGTGTGGACCACCAAAATACCCTTGTGCTAATGATACCTCCATCTGCCTACAGCCTGAGAAGCTCTGCAATGGGAGAAGAGATTGTCCTGATGGATCTGATGAAGGCGATCTTTGTG
Seq A exon
ATGAATGTTCGCTTAATAATGGTGGATGTAGTCATCAATGTTCCGTGGTTCCTGGAGGAAGAATTGTGTGCTCATGCCCCTCAGGATTCAATCTCAGTGTAGACAACAAAACTTGTGAAATTATGGATTATTGCACCAAGCACCTTAAGTGTAGTCAAGTATGTGAACAACATAAAAATAATGTGAAATGCTCATGTTATGAAGGCTGGAAGCTCAGTAAAGATGGAGAAAATTGCATTAGTACTG
Seq C2 exon
ATCCATTTGAAGCTTTCATAATTTTTTCTATTCGACATGAGATCAGAAAAATTGATCTTCACAAACGTGACTACAGCCTTTTAGTTCCTGGTTTAAGAAATACGATAGCACTTGATTTTCATTTCAGTCAGAGTTTATTGTACTGGACAGATGTGGTGGAGGACAAAATTTACAGAGGCAAGCTTTCTGATACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'34-43,'34-42,36-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(61.5=35.3),PF0005713=Ldl_recept_a=PU(93.0=58.8)
A:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=41.0)
C2:
PF0005812=Ldl_recept_b=PU(48.9=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGGGCTATATGTGTGGA
R:
TCCTCCACCACATCTGTCCAG
Band lengths:
293-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]