RnoEX6016698 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25942460-25965697:-
Coord C1 exon
chr3:25965497-25965697
Coord A exon
chr3:25962947-25963192
Coord C2 exon
chr3:25942460-25942657
Length
246 bp
Sequences
Splice sites
3' ss Seq
GAACGTTTGTCTCTTGACAGATG
3' ss Score
9.46
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGCGATGCATCAACAATGCCTGGGTATGTGATGGAGATGTTGACTGTGAGGATCAGTCTGATGAAGAAGACTGCGATAGTTTCTTGTGTGGACCACCCAAGTACCCTTGTGCCAATGATACCTCTGTGTGCCTGCAGCCAGAGAAACTCTGCAATGGGAGAAAGGACTGTCCAGATGGGTCAGATGAAGGCGACCTTTGTG
Seq A exon
ATGAATGTTCTCTGAACAACGGAGGCTGTAGCAACCACTGTTCCGTTGTACCTGGAAAAGGAATTGTCTGTTCCTGCCCAGAAGGACATCAGCTCAAGAAGGACAATAGAACCTGTGAAATCGTAGACTACTGCTCCTCCCACCTGAAGTGTAGCCAAGTGTGCGAACAGCACAAACACATGGTCAAGTGCTCCTGCTATGAAGGCTGGGCGTTGGATACTGATGGGGAAAGCTGCATCAGTGTGG
Seq C2 exon
ATTCTTTTGAGGCATTCATCATATTTTCTATACGTCATGAAATTCGAAGGATTGATCTGCATAAAGGAGACTACAGCCTACTTGTTCCTGGACTGAGAAACACCATAGCACTTGATTTTCACTTCAATCAAAGTTTACTTTATTGGACAGATGTTGTGGAAGACAGAATATACAGGGGCAAGCTGTCAGAGAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'18-23,'18-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(61.5=35.3),PF0005713=Ldl_recept_a=PU(92.9=57.4)
A:
PF0005713=Ldl_recept_a=PD(4.8=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=42.2)
C2:
PF0005812=Ldl_recept_b=PU(48.9=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGTACCCTTGTGCCAAT
R:
TCTGACAGCTTGCCCCTGTAT
Band lengths:
296-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]