DreEX0044240 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35552196-35555126:-
Coord C1 exon
chr19:35554977-35555126
Coord A exon
chr19:35553602-35553892
Coord C2 exon
chr19:35552196-35552345
Length
291 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCCTTCACTGCAGCAG
3' ss Score
8.57
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
GAAGCTGTAAACAGTCAGCTGAAGTCTTTGCAAGATCATGTTGACAAACTTCTCAGTTGGGTTAAGGAGACTGACACTCAAATGCAGGAAGAAACTGGGGTAGACGGACAGACAGTGGCAGAGATCACTCGGAAGCAGCAGTTGTGTGAG
Seq A exon
CAGTTACAGAACTCTCTCACTGCCCGATCCAATGAAGTCGGCAACGTGGCGTTCAATATTCAGGTGTTCATCTCTGAGCATGCTCAAGACCTGCTGCCTGATCAGAGCAGACACCTTCTTGGACAGCTGGAGCAGCTGCAGAGGGTCTTTCACCAGGCCGTTGGTCTCAATGATGCCAGAGCAGAGGCACTATTAGCCCAGCAGATGAGAGAGCATGAACGACTGAAGAAAGAACAGAAAGTGAAAGAAGAGAAAATGGAAAAAGAGAGACAAGCTACAAGGGATAGAGAG
Seq C2 exon
GTTGTGCAGCAGCAGAAGGCTGAATGTTCTCAAAAACTGGAGAGTCTCACAATGTGGATGGCTGGTGCTGCAAGTCTTTTGGCCAGTCAGAGACCTGGAGTTGAGTCAGATGACGTGCACACATTACAGGAGAAGCAAAGAGCGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533-'46-53,'46-51,47-53
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.392 C2=0.526
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(40.2=90.0)
A:
PF0043516=Spectrin=PD(58.0=67.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTAAACAGTCAGCTGAAGT
R:
GCGCTCTTTGCTTCTCCTGTA
Band lengths:
293-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]