DreEX0044254 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35489489-35492251:-
Coord C1 exon
chr19:35492025-35492251
Coord A exon
chr19:35491350-35491556
Coord C2 exon
chr19:35489489-35489716
Length
207 bp
Sequences
Splice sites
3' ss Seq
AATGTGCATGTCTGGCTCAGGAG
3' ss Score
4.83
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCGAGGAGGTCTTGTTGATCCAAGAGAAGTTGGATGGCATCAAAAGTCGCTACGCTGAAATGACGGCGGGCAGTAGCAAGGCCCTTCGGACCCTGGAACAGGCCCTTCAGTTGGCCACACGATTTGCCAGCTCACACGATGACATCAATCAATGGCTGGATAGAGTGGAGGCGGAGCTTAACAACGCTGAGCCAGACACAACACCAGCCTATCAGGACAGACAGAAG
Seq A exon
GAGCTGAAGTGTGTTTCTGCTGAGAAGAGGTTAGTTCTGGACACAGTGAATGAGGTGGGCAGTGCTTTACTGGATCTGGTACCCTGGCGTGCACGGGAAGGACTGGACCGCCTGGTTGCTGATGCCAATCAGCGATACCGCCAAGCAGACGAGACCATCACACAGAGAGTGCAGTTAGTGCAGGCTGCCATCCAAAGGTCACAGCAG
Seq C2 exon
TATGAGGAGGCGGTGGACGCAGAGCTGACGTGGGTTGGAGAGACAGAGAGGAAGTTGGCGTCTCTGGGGCCTTTGAGTCTGGAGCCCGACGTGACTGTGGCTCAACTCCAGGTGCAGAGAGCCTTTAACATCGATATCATCCGTCACAAAGACACCGTTGACCAGCTCCTCAAGACACGAGAGGACATCCTAGAGAGCTGCAGCGAACAACAGAGAGACGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(30.8=43.4)
A:
PF0043516=Spectrin=PU(3.7=5.8)
C2:
PF0043516=Spectrin=FE(70.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCTACGCTGAAATGACG
R:
CTGGAGTTGAGCCACAGTCAC
Band lengths:
294-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]