GgaEX6025257 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5379320-5380424:+
Coord C1 exon
chr23:5379320-5379561
Coord A exon
chr23:5379938-5380144
Coord C2 exon
chr23:5380305-5380424
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGGCCGTTCCTTCCTCCCAGGAG
3' ss Score
10.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
Seq A exon
GAGCTGAAGAAGGAGGTGATGGAGCAGCGGCTCGTCCTGGACACGGTGAACGAGGTGAGCCGGGCGCTGCTGGAGCTCGTGCCATGGCGAGCCCGCGAGGGGCTGGACAAGCTCGTCTCCGACACCAACGAGCGGTACAAGCTGGTCAGTGACACCGTCAGGCAGCGGGTGGAGGAGATCGATGCTGCCATTCAGAGGTCCCAGCAG
Seq C2 exon
TATGAGCAGGCGGCCGACGCGGAGCTGGCCTGGGTGGCTGAGACCAAGCGCAAGCTGATGGCGCTCGGAGCCATCCGGCTGGAGCAGGACCAGACCACGGCCCAGCTGCAGGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'98-111,'98-109,99-111=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
A:
PF0043516=Spectrin=PD(57.0=88.4),PF0043516=Spectrin=PU(3.7=5.8)
C2:
PF0043516=Spectrin=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTCATCCAGGAGAAG
R:
ATCAGCTTGCGCTTGGTCTC
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]