GgaEX6025257 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5696667-5697771:+
Coord C1 exon
chr23:5696667-5696908
Coord A exon
chr23:5697285-5697491
Coord C2 exon
chr23:5697652-5697771
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGGCCGTTCCTTCCTCCCAGGAG
3' ss Score
10.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
Seq A exon
GAGCTGAAGAAGGAGGTGATGGAGCAGCGGCTCGTCCTGGACACGGTGAACGAGGTGAGCCGGGCGCTGCTGGAGCTCGTGCCATGGCGAGCCCGCGAGGGGCTGGACAAGCTCGTCTCCGACACCAACGAGCGGTACAAGCTGGTCAGTGACACCGTCAGGCAGCGGGTGGAGGAGATCGATGCTGCCATTCAGAGGTCCCAGCAG
Seq C2 exon
TATGAGCAGGCGGCCGACGCGGAGCTGGCCTGGGTGGCTGAGACCAAGCGCAAGCTGATGGCGCTCGGAGCCATCCGGCTGGAGCAGGACCAGACCACGGCCCAGCTGCAGGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'72-73,'72-72,73-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
A:
PF0043516=Spectrin=PD(57.0=88.4),PF0043516=Spectrin=PU(3.7=5.8)
C2:
PF0043516=Spectrin=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTCATCCAGGAGAAG
R:
ATCAGCTTGCGCTTGGTCTC
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]