DreEX0044469 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28590402-28592309:-
Coord C1 exon
chr5:28592161-28592309
Coord A exon
chr5:28590761-28590852
Coord C2 exon
chr5:28590402-28590581
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTCTCAATGTAGTTG
3' ss Score
7.92
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
AGAAAAGATTTCGATAGACGTGGAGCTTTTGGTTTGGAGAAACTTTTGCAAGGCAAAGTGAATGTTTCGGGTGTGTTGGGAGACCAAAATCATGGACTGGACCTCAAAAATGCAGATAAAGGATCTGAGGGACAAAAGCCTATAATTAG
Seq A exon
TTGGCGTGGAGCTGTGATCGAAGAAGAACAAGCCTCTGATACTGACACCAAAGACACAGAAAACCAAGGAGACCCAGCTTCATTAGCACTTG
Seq C2 exon
CCGAGAGTAGACTGGAGGCTGTGAGAGAAGCTTTTAGACATGCCTGGAAAGGTTACAAGGACTTCGCTTGGGGTCACGATGAACTCAAACCAATCTCTAAATCATACGGAGAGTGGTTTGGACTTGGGCTGACCCTAATTGATGCTCTAGATACCATGTGGATCTTGGGTCTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0153215=Glyco_hydro_47=PU(11.4=82.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTCGGGTGTGTTGGGAG
R:
GAGTTCATCGTGACCCCAAGC
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]