GgaEX1034696 @ galGal4
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr17:344537-348441:-
Coord C1 exon
chr17:348281-348441
Coord A exon
chr17:346685-346794
Coord C2 exon
chr17:344537-344722
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCAGCCTCTTGTATTTGCAGCTG
3' ss Score
8.54
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGAAGCCAAAATTACCACATGGTCGGCGTAATCCTTCCAATTTTCAGATCAAGCCCCCTTGGGGAGATGTGAGGCTGCAAACCCGACATGACACCAGGAAGGCAGTAGAAGAGCCAGCCCAGGCTGATAAACAAGAGAAAACAGAGAAATCTGTTATCAG
Seq A exon
CTGGAGAGGAGCAGTGATAGAACCTGACCAAAGCAGTGAACCTCCATCTAGTAGAGTAAAGGAACCAGAAAAACCTTCATCTGTGGAAGGTGAAAGCCAGAAAGAACCAG
Seq C2 exon
TGCCCATAAACGAACGTCAGATGGCTGTGATAGAAGCCTTCCGCCACGCGTGGAAAGGATACAAAGATTTTGCCTGGGGCCATGATGAACTGAAGCCATTATCCAAGTCTTACAGTGAGTGGTTTGGCCTCGGGCTTACCTTGATTGATGCCTTGGATACTATGTGGATTTTAGGCCTGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'8-14,'8-9,10-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGGTCGGCGTAATCCTT
R:
TGGCTTCAGTTCATCATGGCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]