HsaEX6064203 @ hg38
Exon Skipping
Gene
ENSG00000177239 | MAN1B1
Description
mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr9:137088869-137108859:+
Coord C1 exon
chr9:137088869-137089005
Coord A exon
chr9:137097828-137097937
Coord C2 exon
chr9:137108829-137108859
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCTTCTCCCCCGAAGCTG
3' ss Score
7.91
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTCTGGCTTTCAGGCTAGAGGAAGAGCAGAAGATGAGGCCAGAAATTGCTGGGTTAAAACCAGCAAATCCACCCGTCTTACCAGCTCCTCAGAAGGCGGACACCGACCCTGAGAACTTACCTGAGATTTCGTCACAG
Seq A exon
CTGGAGGGGAGCGGTGATCGAGCCTGAGCAGGGCACCGAGCTCCCTTCAAGAAGAGCAGAAGTGCCCACCAAGCCTCCCCTGCCACCGGCCAGGACACAGGGCACACCAG
Seq C2 exon
AAGACACGAATCATGACTCACGATTGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177239_MULTIEX1-2/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=0.963 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENST00000371589fB19357
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTTTCAGGCTAGAGGA
R:
AGCAATCGTGAGTCATGATTCGT
Band lengths:
164-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains