MmuEX6099479 @ mm10
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25338113-25343280:+
Coord C1 exon
chr2:25338113-25338267
Coord A exon
chr2:25341607-25341716
Coord C2 exon
chr2:25343224-25343280
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTCCCCCTCAAGCTG
3' ss Score
8.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGCGGCAAAGGCATTTTCGGCGGGGCCCTCCCCATCTGCAGATTAGACCCCCCAACACAGTCTCCAAGGATGGGATGCAGGATGATGCTAAGGAGAGAGAAGCAGCCCTGGGGAAGGCTCAGCAGGAAGAAAACACACAGAGAACCGTCATCAG
Seq A exon
CTGGCGGGGAGCCGTGATTGAGCCTGAACAGGCCACTGAACTTCCTTACAAAAGAGCTGAAGCCTCCATCAAACCTCTGGTTTTGGCATCCAAGATATGGAAAGAGCCAG
Seq C2 exon
CCCCCCCGAATGAGCGCCAGAAGGGAGTGATTGAGGCCTTTCTCCATGCTTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646-'13-16,'13-14,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.272 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGCAAAGGCATTTTCG
R:
CAAGCATGGAGAAAGGCCTCA
Band lengths:
207-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types