GgaEX1034696 @ galGal3
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:724364-728268:-
Coord C1 exon
chr17:728108-728268
Coord A exon
chr17:726512-726621
Coord C2 exon
chr17:724364-724549
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCAGCCTCTTGTATTTGCAGCTG
3' ss Score
8.54
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGAAGCCAAAATTACCACATGGTCGGCGTAATCCTTCCAATTTTCAGATCAAGCCCCCTTGGGGAGATGTGAGGCTGCAAACCCGACATGACACCAGGAAGGCAGTAGAAGAGCCAGCCCAGGCTGATAAACAAGAGAAAACAGAGAAATCTGTTATCAG
Seq A exon
CTGGAGAGGAGCAGTGATAGAACCTGACCAAAGCAGTGAACCTCCATCTAGTAGAGTAAAGGAACCAGAAAAACCTTCATCTGTGGAAGGTGAAAGCCAGAAAGAACCAG
Seq C2 exon
TGCCCATAAACGAACGTCAGATGGCTGTGATAGAAGCCTTCCGCCACGCGTGGAAAGGATACAAAGATTTTGCCTGGGGCCATGATGAACTGAAGCCATTATCCAAGTCTTACAGTGAGTGGTTTGGCCTCGGGCTTACCTTGATTGATGCCTTGGATACTATGTGGATTTTAGGCCTGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'5-9,'5-6,6-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGGTCGGCGTAATCCTT
R:
TGGCTTCAGTTCATCATGGCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]