RnoEX0052024 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2553004-2557735:+
Coord C1 exon
chr3:2553004-2553158
Coord A exon
chr3:2554951-2555060
Coord C2 exon
chr3:2557550-2557735
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTCTCCCCTCAAGCTG
3' ss Score
8.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAGCGGCAAAGGCATTTGCGGCGGGGCCCTCCGCACCTGCAGATCAGACCCCCCAACACCGTCTCCAAAGATGGGATGCAGGATGATGCTAAGGAGAGGGAAGCAGCCCTGGGGAAGGCTCAGCAGGAAGAAAACACCCAGAGAACCGTCATCAG
Seq A exon
CTGGCGGGGAGCAGTAATTGAGCCTGAACAGGCCACTGAACCTCCTTCCAAAAGAGCTGAAGCCTCCATCAAGCCTCTGTTTTTGGCGTCCAGGATATGGAAAGAGCCAG
Seq C2 exon
CTCCCCCAAATGAGCGCCAGAAGGGAGTGATTGAGGCCTTTCTCCATGCTTGGAAAGGTTACCAAAAGTTCGCTTGGGGCCATGATGAACTGAAGCCTGTGTCCAAAACCTTCAGTGAGTGGTTTGGCCTGGGCCTCACCCTGATCGATGCCTTGGATACCATGTGGATTTTGGGTCTGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559-'8-11,'8-8,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.500 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0153215=Glyco_hydro_47=PU(11.4=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGATGCAGGATGATGC
R:
CAAGGCATCGATCAGGGTGAG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]