DreEX0045054 @ danRer10
Exon Skipping
Gene
ENSDARG00000059294 | marco
Description
macrophage receptor with collagenous structure [Source:ZFIN;Acc:ZDB-GENE-120514-2]
Coordinates
chr9:808724-810243:-
Coord C1 exon
chr9:810156-810243
Coord A exon
chr9:809916-809951
Coord C2 exon
chr9:808724-808777
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTTTCATTTCATTTTATAGCCA
3' ss Score
8.58
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAATGCTTTACTGATCTATGTGGAACTGATGGAACATTAGAACACCTTAGGACTCAAATTAACCAACTCAATGCTACTGCAGAAAAAG
Seq A exon
CCATCGTTTGCCCGCCTGGACCACCTGGACCACCAG
Seq C2 exon
GTTCTAATGGAATTCCAGGGTTCCCGGGACAGAAAGGAATTCCAGGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059294-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(17.2=76.9)
C2:
PF0139113=Collagen=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATCTATGTGGAACTGATGGA
R:
GGAATTCCTTTCTGTCCCGGG
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]