MmuEX6026953 @ mm10
Exon Skipping
Gene
ENSMUSG00000026390 | Marco
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:120492032-120494262:-
Coord C1 exon
chr1:120494044-120494262
Coord A exon
chr1:120493620-120493655
Coord C2 exon
chr1:120492032-120492130
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTTCCCTTACAGAGT
3' ss Score
11.95
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTCAATCTGCAGGAGCAGCTCCAGATGCTAGAGATGTGCTGTGGCAATGGATCACTAGCTATCGAGGACAAGCCCTTCTTCTCGCTGCAGTGGGCACCCAAAACACACCTGGTACCTAGAGCACAGGGGCTGCAAGCCTTGCAGGCCCAGCTCAGCTGGGTCCATACCAGCCAGGAGCAACTCCGTCAGCAGTTCAACAACCTCACTCAAAATCCAG
Seq A exon
AGTTGTTCCAGATTAAAGGTGAACGAGGCTCTCCAG
Seq C2 exon
GTCCAAAAGGGGCCCCGGGTGCTCCTGGAATCCCCGGGCTGCCTGGGCCAGCTGCTGAGAAGGGAGAAAAGGGGGCTGCAGGTCGTGATGGAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.769 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(11.7=53.8)
C2:
PF0139113=Collagen=FE(55.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCAGCAGTTCAACAACC
R:
AGCCCCCTTTTCTCCCTTCTC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types