GgaEX1035139 @ galGal3
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
NA
Coordinates
chr7:30084881-30086527:-
Coord C1 exon
chr7:30086297-30086527
Coord A exon
chr7:30086068-30086103
Coord C2 exon
chr7:30084881-30084925
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCACTAAGTATTTATTTCAGGGC
3' ss Score
5.25
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGTTTAAGATGAAGGAGGAGATGCTGAAACGGCAGGAAAATACTGCTTTCCGTGCCGAAGAGATGATAGGAAGGTCCTATGCTGACAACCTTCTTTTGGAGAAAAACTTCACAGAGAGGGGCATGGGACGTGAAGAAAACTGGAGGAGGCACTTAGAAAAGGAAATCACCGTAATTAAAAGCAGCAATGCAAACTTGATGATGATGATGAGCAACATCACCCTGCTTGCAG
Seq A exon
GGCGTCCTGGACACAAAGGAGAACGCGGTCCACCAG
Seq C2 exon
GGCTACAGGGACCACCGGGGATAAAGGGAGACCAAGGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119-'3-8,'3-4,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(5.9=2.6)
A:
PF0139113=Collagen=FE(12.2=100)
C2:
PF0139113=Collagen=PU(27.4=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGGCACTTAGAAAAGGA
R:
TTGGTCTCCCTTTATCCCCGG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]