HsaEX0037902 @ hg38
Exon Skipping
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:118970114-118974440:+
Coord C1 exon
chr2:118970114-118970338
Coord A exon
chr2:118971499-118971534
Coord C2 exon
chr2:118974333-118974440
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCACTCTCCTTCCCTTGCAGGGA
3' ss Score
12.72
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTGAATCTGCAGGCGCGGCTCCGGGTCCTGGAGATGTATTTCCTCAATGACACTCTGGCGGCTGAGGACAGCCCGTCCTTCTCCTTGCTGCAGTCAGCACACCCTGGAGAACACCTGGCTCAGGGTGCATCGAGGCTGCAAGTCCTGCAGGCCCAACTCACCTGGGTCCGCGTCAGCCATGAGCACTTGCTGCAGCGGGTAGACAACTTCACTCAGAACCCAG
Seq A exon
GGATGTTCAGAATCAAAGGTGAACAAGGCGCCCCAG
Seq C2 exon
GTCTTCAAGGTCACAAGGGGGCCATGGGCATGCCTGGTGCCCCTGGCCCGCCGGGACCACCTGCTGAGAAGGGAGCCAAGGGGGCTATGGGACGAGATGGAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169-'7-6,'7-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(3.1=2.6)
A:
PF0139113=Collagen=FE(18.5=100)
C2:
PF0139113=Collagen=FE(55.4=100),PF0139113=Collagen=PU(15.0=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGGCTGCAAGTCCTG
R:
CCCCCTTGTGACCTTGAAGAC
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development