RnoEX6056290 @ rn6
Exon Skipping
Gene
ENSRNOG00000049303 | Marco
Description
macrophage receptor with collagenous structure [Source:RGD Symbol;Acc:1589662]
Coordinates
chr16:85133007-85135260:-
Coord C1 exon
chr16:85135039-85135260
Coord A exon
chr16:85134618-85134653
Coord C2 exon
chr16:85133007-85133105
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTTCCCTTACAGAGT
3' ss Score
11.95
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTCAATCTGCAGGAGCAGTTCCAGAGCCTAGAGATGTGTTGTGACAATGGAACACTAGCTGCTGAGGACAAGCCATTCTTCTCTCTGCAGTGGGCACGTCCCAAAACACACATAGTATCAGGAGCACAGGGGCTGCAAGCCTTGCAGGCCCAGCTTAGCTGGGTCCACACCAGCCAGGAGCAACTGCGTCAGCAAGTTGACAACCTCACTCAAAATCCAG
Seq A exon
AGTTGTTCCGGATTAAAGGTGAACGAGGCTCTCCAG
Seq C2 exon
GTCCAAAAGGGGCCCCGGGCGCACCGGGAATCCCAGGCCTGCCTGGGCCATCTGCTGCGAAGGGAGAAAAGGGGGCTGCGGGTCGTGACGGAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049303-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(11.5=53.8)
C2:
PF0139113=Collagen=FE(54.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAGCAAGTTGACAACCT
R:
CAGCCCCCTTTTCTCCCTTC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]