GgaEX1035139 @ galGal4
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
macrophage receptor MARCO [Source:RefSeq peptide;Acc:NP_990067]
Coordinates
chr7:27990975-27992621:-
Coord C1 exon
chr7:27992391-27992621
Coord A exon
chr7:27992162-27992197
Coord C2 exon
chr7:27990975-27991019
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCACTAAGTATTTATTTCAGGGC
3' ss Score
5.25
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGTTTAAGATGAAGGAGGAGATGCTGAAACGGCAGGAAAATACTGCTTTCCGTGCCGAAGAGATGATAGGAAGGTCCTATGCTGACAACCTTCTTTTGGAGAAAAACTTCACAGAGAGGGGCATGGGACGTGAAGAAAACTGGAGGAGGCACTTAGAAAAGGAAATCACCGTAATTAAAAGCAGCAATGCAAACTTGATGATGATGATGAGCAACATCACCCTGCTTGCAG
Seq A exon
GGCGTCCTGGACACAAAGGAGAACGCGGTCCACCAG
Seq C2 exon
GGCTACAGGGACCACCGGGGATAAAGGGAGACCAAGGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGGCACTTAGAAAAGGA
R:
TTGGTCTCCCTTTATCCCCGG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]