DreEX0047739 @ danRer10
Exon Skipping
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10840022-10848166:-
Coord C1 exon
chr2:10847968-10848166
Coord A exon
chr2:10843369-10843450
Coord C2 exon
chr2:10840022-10840114
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTGCTTTTTGCAGATA
3' ss Score
10.88
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGACTCAGCAAGTGCAGATAACCTGGCCGCCCATCAAAATACTCCAAATCGCCAACACAAGTCCCCTGTGTCCTTGCCCCGATTTCCCTTGAAAGATGGGCTGACCGACACGACAAAGCTTGCTGGCAAGTTTGAGGAAGGGCAGGACGTCCTGGCCCGGTGGTCAGATGGCCTCTTTTACCTGGGAACCATCTCCAAG
Seq A exon
ATAGATAAACATAAGCATCGCTGCTTTGTGATCTTTGAAGATCAGTCTAAGTCCTGGGTTCTGTGGAAGGACATACAAACAG
Seq C2 exon
GGGACAGTGGAGGGGAAATGCTCTGCTCCATATGCCAGAATGAAAGCTCTGAACCCCCCAATGAAATTGTCATCTGTGACAAGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(32.8=28.4)
A:
PF150571=DUF4537=FE(46.6=100),PF0013017=C1_1=PU(9.6=17.9)
C2:
PF150571=DUF4537=PD(17.2=31.2),PF0013017=C1_1=FE(59.6=100),PF144461=Prok-RING_1=PU(71.8=87.5),PF0062824=PHD=PU(44.4=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACAAGTCCCCTGTGTCC
R:
AGAGCATTTCCCCTCCACTGT
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]