GgaEX0008352 @ galGal3
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14700947-14703012:-
Coord C1 exon
chr8:14702814-14703012
Coord A exon
chr8:14702573-14702666
Coord C2 exon
chr8:14700947-14701176
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTGTATTCATGTTTTCCAGATA
3' ss Score
8.76
5' ss Seq
TCAGTGAAG
5' ss Score
-6.92
Exon sequences
Seq C1 exon
AGACTCTACAGCGGTGGGTAATTCACTGGTCCATAAGCGGTCTCCTTTACGTCGAAGTCATAAGGCATCAGCATCCTCACCCAAACTATCGTTACGTGATGGACAGAAAGCCAAAAAGCCACTGTGTAAATTTGAAGAAGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq A exon
ATAAACAAACTGAAACAGAACTGCTTCATTATATTTGAGGACAGTTCCAAGTCTTGGGTTCTCTGGAAGGACATACAAACAGGCAAGAACTTCA
Seq C2 exon
GAGCCACTGAAAGTGGGGAAATGGTCTGTACAATATGTCAGGAGGAGTATTCAGAAGCACCGAATGAGATGGTTATATGTGATAAATGTGGGCAAGGTAACTAGATTTTTTTTCCTGTTTCCTGCATTTTAAAAGATTTTTAATTTGTTTTCTGAAGGAAGGTGTTGATATGACTACCTCTGACTGCTCAGCTGATCTTACATTTCATAGCTCTTAGAGGCTGTTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(32.2=28.4)
A:
PF150571=DUF4537=FE(47.7=100),PF0013017=C1_1=PU(6.2=9.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGATGGACAGAAAGCCAA
R:
ACCATCTCATTCGGTGCTTCTG
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event