MmuEX0029977 @ mm9
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108509941-108516113:+
Coord C1 exon
chr5:108509941-108510042
Coord A exon
chr5:108510156-108510237
Coord C2 exon
chr5:108516018-108516113
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTTGTGTATTGCAGATA
3' ss Score
10.24
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
GATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq A exon
ATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAGGACAGTTCCAAATCCTGGGTTCTCTGGAAGGACATCCAAACAG
Seq C2 exon
GAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-'10-13,'10-10,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(31.7=28.4)
A:
PF150571=DUF4537=FE(45.0=100),PF0013017=C1_1=PU(6.0=10.7)
C2:
PF0062824=PHD=PU(49.0=92.3),PF144461=Prok-RING_1=PU(54.3=96.2),PF0013017=C1_1=PU(61.0=96.2),PF036048=DNA_RNApol_7kD=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCATGTAAATTTGAAGAGGGT
R:
TGACCACACTTATCACATATAACCA
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: