MmuEX0029977 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108060350-108087094:+
Coord C1 exon
chr5:108060350-108060863
Coord A exon
chr5:108081137-108081218
Coord C2 exon
chr5:108086999-108087094
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTTGTGTATTGCAGATA
3' ss Score
10.24
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
CTGCTCGGCAAAAAAGTGGTATATACAGTGGGGTTCTCATAAACAGTAAGGCAAAAATACTGACCAGTTCTGAGGGACCCTAAGGGGTTTTCCAGTCTCACACCCTCCTTACAGCCTCCCCCACCCTCCTAGAGTCAAGGCTAGGCCAAGTTCCATTCTCCACCCACAGGAACATTCTTGAGTAAAACGATCCTTAGAATGTACCTGATAGTTTCCTGACTCTTTGGAAAGTCCCAGGTGGAGTTCAAATGCGTGTCATGATTGCTAGCCAATAGATTTAAAGGTCAATATGCTTAGCCAATAAGTTTGAACTGTAACCTTGCTGACGTAATCTGTGCCACTAAAAAGTATAAAAACTTCTTGTAATAGTCATTGGGGTCGCCATCTTAGTAGCTCGCCTTGAGGGACTAATTGAAGGAAAACCGGGACGTTCCGGGAAAATACGCCTCTTGCTTTTGCATTAATCTGCGTCTCGGTGTCTCACTCCGGGGCATCTCGAA
Seq A exon
ATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAGGACAGTTCCAAATCCTGGGTTCTCTGGAAGGACATCCAAACAG
Seq C2 exon
GAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX1-8/8=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF150571=DUF4537=FE(42.9=100),PF0013017=C1_1=PU(7.7=14.3)
C2:
PF150571=DUF4537=PD(23.8=45.5),PF0013017=C1_1=FE(61.5=100),PF144461=Prok-RING_1=PU(56.0=84.8),PF0062824=PHD=PU(44.4=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATAGTCATTGGGGTCGCC
R:
CAGACCATTTCCCCACTCCCA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types