RnoEX0056247 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2680590-2685410:-
Coord C1 exon
chr14:2685212-2685410
Coord A exon
chr14:2685019-2685100
Coord C2 exon
chr14:2680590-2680685
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCCTCTGTATTGCAGATA
3' ss Score
10.57
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
AGACTCTACAGGAGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTCACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq A exon
ATAAACATTTTGAAACAGAGCTGCTTCATCACATTTGAGGACAGTTCTAAGTCCTGGGTTCTCTGGAAGGACATCCAAACAG
Seq C2 exon
GAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCACCTAATGAAATGGTTATCTGTGATAAGTGCGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(31.1=28.4)
A:
PF150571=DUF4537=FE(44.3=100),PF0013017=C1_1=PU(6.0=10.7)
C2:
PF150571=DUF4537=PD(22.6=42.4),PF0013017=C1_1=FE(61.5=100),PF144461=Prok-RING_1=PU(57.1=84.8),PF0062824=PHD=PU(44.4=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAACCAAAAGACCTCAGCA
R:
AGACCATTTCCCCACTCCCAG
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]