DreEX0047917 @ danRer10
Exon Skipping
Gene
ENSDARG00000070412 | mtmr7b
Description
myotubularin related protein 7b [Source:ZFIN;Acc:ZDB-GENE-050913-66]
Coordinates
chr1:15791274-15795884:-
Coord C1 exon
chr1:15795750-15795884
Coord A exon
chr1:15794698-15794852
Coord C2 exon
chr1:15791274-15791803
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGCTGGGAACGATGTTGTAGGTT
3' ss Score
1.76
5' ss Seq
AAGGCATAC
5' ss Score
-0.11
Exon sequences
Seq C1 exon
GTTACAGGAGAGAACACACTCTCTGTGGCCACATCTGTGGGAGAACAGAGCTGAATACACCAACCCTCTCTACAGGACAGACCACAGCCAGACACAGGGGGTTCTCAGACCTCTCACCACTGCCTACTGCTTCAA
Seq A exon
GTTTTGGAAGGGGATGTACGGCCGTGCAGAGAGAAGTTTGTCTTCTCAGCAGTCTCCAGCAGACTGTCTGAACGCAGTGAGGGAGGAGTCACAGCAGCTGGAGGAGGAGCTTACAGCCCACCAGGAGGTACCGCGGGAGACGGACGCTGGCCAAG
Seq C2 exon
AGACTTGCCCAGCTGAAGGAGAAGAAAACTTCAGGGGAGAGGAAGAAGATCAGCAGGTTGTCTGAACGCGCTCGCCGTCCCACTCCGAATGAGGGTGAACTCGACAGCCCTCAAGACTACTTCAGCACCCCGAGAGGCGAGAAACACACTCCTTCCTTCACACTGCCGCTAGATCTAGCAGCCCAGACCAAGAACGGTGACCCTGATGACCTTTCAACCTGCAGTGATTTGGAGTCAGGGGTGGCTGATCTCAGCAGCCACTCCTCCAGTGTTGGAGATGACAATAAAGACCCCGATTCTGAAGAGGTGGTCAAAATACCTGCCTGAATTGAACAGAACTGGTAACAATGAGGGATAAAAGCATAGTAACGGGTACCGAACTGGGAACTGTGCTGTTTTTTAAATGTTATTTTATTTTAAATGAACGTGTGAATTTATATTTAAATACAGTACGAGCACAAATACACATATCATGAAACAGTCTGAGGAAAAACACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070412_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.524 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACAGGGGGTTCTCAGA
R:
CATCAGGGTCACCGTTCTTGG
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]