DreEX0047923 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21541238-21549052:-
Coord C1 exon
chr5:21548883-21549052
Coord A exon
chr5:21543887-21544009
Coord C2 exon
chr5:21541238-21541400
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCAATGTATTTTTTTGCAGGTG
3' ss Score
10.79
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
ATATTTCCTCCCGTTAGCTGACATGATTGTAGTCCTCATGTTAGGGAGGAACGCGACAGCAAGTTCCTGAAACAAACATGACAACTCCTAAATACCCAAACTCCGAAAGTTTAGCGTGGACAGTTGGATGATAAAACAGTGAAATCATGGAGCACATCATAACGCCGAAG
Seq A exon
GTGGAGAATGTGAAACTACTGAACAGGTACACTGAAAAGAAGTCAGCTCTGGGCACTCTTTACTTGACCGCGACTCATCTTATCTATGTGGAACAAACCAGCAACACACGCAAAGAAACATGG
Seq C2 exon
GTGCTGCATCATCACATCTTGTCAGTGGAGAAACTTCTGTTAACTGCGTCCGGTTGTCCACTGTTGATCCGCTGTAAAACCTTCCAGCATCTGCATCTGCTGTTTCAAAAAGAGAGGGATTGTCAGGATGTGTATCAGTCACTTCTACGGCTTTTTCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116053=Vps36_ESCRT-II=PU(9.1=75.0)
A:
PF116053=Vps36_ESCRT-II=FE(60.6=100)
C2:
PF116053=Vps36_ESCRT-II=PD(25.8=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTTAGGGAGGAACGCG
R:
TGAAACAGCAGATGCAGATGC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]