GgaEX1037506 @ galGal3
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
NA
Coordinates
chr4:11716305-11718317:+
Coord C1 exon
chr4:11716305-11716418
Coord A exon
chr4:11717397-11717519
Coord C2 exon
chr4:11718155-11718317
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTGCTCTTGCTGCAGGTG
3' ss Score
10.74
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GAGACTTGCGGCGGGGCGGGAGCTGCCCGCTGCAAATGGCGGGGCGGAGGCCTGGCCGCGCGGGTGAGCTGAGGTGCGGGCGGTGCCATCATGGAGCACATCACCACGCCGAAG
Seq A exon
GTGGAAAACGTGAAATTACTAGATCGCTATACAAATAGGAAGGCAGCAAGCGGGACGTTATACCTGACAGCCACCCATCTCATCTATGTGGATGCTTCTGCTGAAGTCAGAAAAGAAACATGG
Seq C2 exon
ATTCTGCATCACCATATTGCAACTGTAGAAAAATTGCCTCTGACCACAGCTGGATGCCCACTCCTTATTCACTGCAAGAACTTCCACGTGGCTCACTTTGTTATTGGGCAGGAACGTGATTGTCACGAAGTGTATACCTCCTTGCTCAAACTTTCACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116053=Vps36_ESCRT-II=PU(1.7=12.5)
A:
PF116053=Vps36_ESCRT-II=FE(66.7=100)
C2:
PF116053=Vps36_ESCRT-II=PD(26.7=29.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCTGAGGTGCGGG
R:
TGTGAAAGTTTGAGCAAGGAGGT
Band lengths:
210-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]