Special

GgaEX1037506 @ galGal4

Exon Skipping

Gene
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11583881-11585669:+
Coord C1 exon
chr4:11583881-11583981
Coord A exon
chr4:11584749-11584871
Coord C2 exon
chr4:11585507-11585669
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTGCTCTTGCTGCAGGTG
3' ss Score
10.74
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCTGGTGGCCCCCGCCTCTGCCCTGTGCGGAGGGCCGTGCTGGCGGAGCCGCAGGCCGGGCGCTGCGTTGTCGCTGCCCGTGAGGAGCCGATGTGTCAGAG
Seq A exon
GTGGAAAACGTGAAATTACTAGATCGCTATACAAATAGGAAGGCAGCAAGCGGGACGTTATACCTGACAGCCACCCATCTCATCTATGTGGATGCTTCTGCTGAAGTCAGAAAAGAAACATGG
Seq C2 exon
ATTCTGCATCACCATATTGCAACTGTAGAAAAATTGCCTCTGACCACAGCTGGATGCCCACTCCTTATTCACTGCAAGAACTTCCACGTGGCTCACTTTGTTATTGGGCAGGAACGTGATTGTCACGAAGTGTATACCTCCTTGCTCAAACTTTCACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF116053=Vps36_ESCRT-II=FE(66.7=100)
C2:
PF116053=Vps36_ESCRT-II=PD(26.7=29.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCGCTGCCCGTGAG
R:
TGGTTGTGAAAGTTTGAGCAAGG
Band lengths:
197-320
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]