DreEX0051774 @ danRer10
Exon Skipping
Gene
ENSDARG00000101234 | nsmfb
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor b [Source:ZFIN;Acc:ZDB-GENE-080603-4]
Coordinates
chr5:27833078-27844836:+
Coord C1 exon
chr5:27833078-27833464
Coord A exon
chr5:27843842-27843903
Coord C2 exon
chr5:27844153-27844836
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTCTCTCTGCAGAGC
3' ss Score
11.82
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
AGAGCAAGTGCACGAGCGCATTCTGGCGTGCTGGCAGCTCACCGTCCACAATGCTCTGTTAACTCAAACTCTCTTCACCAGAGATCAAAAACTTACTTCTCGTAGTGAATACAGTCGGATGTGGCGTTCCTAAACATGAGGAACAAACGGAGCATCTGACACAGACCCTGAGCAGCAGTTTGATTCGGGGAGTAGAGTGAAGCCGATCGTATCTCCACTCTGCGGATGATTTGTTTGCGTTGTGCTTTTCTTTCCTTCATTGCAGATGTGGCGAGTGGAATGAGCTGTTTTCTCACATCGGTCTTGTCACTGCAGCATGGGAACTGCCGTGTCCAAAAAGAAGAATTTAAGGAATGATGCGATTTCTTCTGTTGCCGCAAAAGTTAG
Seq A exon
AGCAGCTCGAGCATTTGGAGAGTACCTTTCTCACACACACCCTGAGAACCGCAACAGATCAG
Seq C2 exon
ATCACTTGCTATCTGACACCTTCATTGGTCAGGAGACAGATTCCCCAGACATTAGCAGACTGAACAACAATAACAGCCTCCAGCCATACTCCCAACACACTCTAATAGTCAAGCCCAGTCAAGAAGAGCTTCAGCAAGGCAGTCAGTCTGCACCCCTTCCTACAAGTTCCAAGCGGCGGCTCTCCGTAGAACGCAGCCTTTCTTCTGAGGATCAGCAGAATCAGAGGCGTACCGAGAGTTCTGTGAAGCCAGCACGTGTCTACACCATTACCAGGGAGCGAGATATGCTTGGGGGCCAGGGAAGCGAGGAGAGTTTGGAGTTAGAGGTTCTGAAGAGGACATCAGAGCCATCACAGATCAACCCTCCAACAGGTTTACGTGGAAGCCATCATCGAGGAAGCCAACATCGTGGGAACAACGGCCCCACCCACCAGCATCATTACGGTCATGCACCCATGGCACAACCTTTGCAGAGCTCAGGGAGCACCCATAACATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101234_MULTIEX1-1/11=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.864 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCGGTCTTGTCACTGCA
R:
GGGGAATCTGTCTCCTGACCA
Band lengths:
140-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]