GgaEX0012660 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1717740-1734574:+
Coord C1 exon
chr17:1717740-1717810
Coord A exon
chr17:1725266-1725327
Coord C2 exon
chr17:1734095-1734574
Length
62 bp
Sequences
Splice sites
3' ss Seq
GGTGATGCTTGGATGCACAGAGC
3' ss Score
0.19
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGGGCACAGCCGTGTCCAAAAGGAAGACGCTGAGGAACGAGGCCATGTCGTCGGTGGCGGCCAAAGTGAG
Seq A exon
AGCGGCAAGGGCTTTTGGAGAATACCTTTCACAAAATCATCCTGAAGGCAGAAATGGCTCAG
Seq C2 exon
ATCACCTGTTAGCAGACTCCTACATCGGGCAGGAGGACTCCCCCGAGATGCAGCAGGCAGCACAGAACAAGCGCAGGCTCTCTGTCATCTCCGATGGCAAGTTTGAGAGGAGCTTCTCTGAGGAGCAGACAGAGAAGATGCCAAGCGAAGGACCGAAGCCACGAGTCTACACGATCTCTGGCGAGAGGCCGATGCTGTCAGACCACGAGAACGAAAGTATGGAACTGGTGGTGATGAAAGGGGCTGCCCAAGAGGAATGTCACCACGGCCACCCCGTGCACGGTGCTGGTGGCTCTCACGGTGTCAGCAGGCATTGCAAGGGCTGGCCTGGAAGCCGGCAGGGATCCAAGGAGTGCCCAAACTGCACCCGGCTGGCTGCTCCTTCCCATCATTCCTTTGACCTTGAGCCACATCAATCCGGCGAGACTGGATGGCACAGAAAAAGGCTGGAAAGGATGTACAGTGTCGATCGAGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.818 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCGTGTCCAAAAGGAAG
R:
CTTGTTCTGTGCTGCCTGCT
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]