DreEX6083536 @ danRer10
Exon Skipping
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13396375-13438872:-
Coord C1 exon
chr21:13438720-13438872
Coord A exon
chr21:13397396-13397454
Coord C2 exon
chr21:13396375-13397163
Length
59 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTGCTCTTTTGCAGAGC
3' ss Score
10.22
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TCGTATTTTTCCACGCGTTTTCATCCCATGCTTTGACATCTGGAATGTGTGGTTTTCCTGCAAGCGTTGTTTCCATGCCAGCATGGGAACTGCAGTGTCCAAAAGGAAGAATCTGAGAAATGATGCGATTTCTTCGGTGGCAGCCAAAGTTAG
Seq A exon
AGCAGCTCGTGCATTTGGAGAGTACCTTCACACCCATCCTGAGAACTGCAACGGATCAG
Seq C2 exon
ATCACTTACTGTCTGACACCCTCGTTGGCCACGACTCTGACTCCCCAGACAGCCTGTGTGCTCAGAACAACAACCACAGCTGTACCCTCCAGGGCTCCCCCATCAGCACCGACGCCAGCCTGATCAACCCTGCCCTGGGTCTTCTGGAACCACCACCCCCTACAACATCCTCCAAGAGCCGGTTATCCCTAGAGCGCAGCTTTTCAGCAGAGGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCTCGAGTCTACACCATCACCGGAGAGAGCGGAATGCTGGGAACCAGTCGGGGAAGCAAAGAGAATCTGGAGCTTGAGGTCTTGAAAGAGGCTCTCTCCCAGCCCTCGACATCATCCAACACGTCATCTCCAACCCAGCGACACCACCACCATGGAGGCGGAGGTGGAGGCGGAAACCATCATCACAGCAATCACCATCATTCCAACCACCATCATGCCAACACCAGCGGTAGCAGTGGAAATAGCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-'0-3,'0-1,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.238 C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000139568fB4345
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGAACTGCAGTGTCCAA
R:
TTGTTCTGAGCACACAGGCTG
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]