BtaEX0025005 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105673837-105676850:+
Coord C1 exon
chr11:105673837-105674066
Coord A exon
chr11:105674472-105674533
Coord C2 exon
chr11:105676775-105676850
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCGCTGTCCACCCCCTCAGAGC
3' ss Score
8.69
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CGGCGGGGCGCGTGGAGGGCCCCGGAGCTGCCATGCGGGTCCCGAGCCCGAACCCGAGCCCGAGCCTGATCCCAGTCCTCGGCGCGGCGCGGCACCCTCGACGGAGGCGGCGGGCGCGGGGCGCGCTCTGAGGCCTGGGGATGCGCCGCCGCCTCGATCATGGGCGCCGTCGCCTCCCGGAGGAGGGCGCTAAGAAGCGAGGCCATGTCTTCGGTGGCGGCCAAAGTGCG
Seq A exon
AGCAGCCCGAGCGTTTGGCGAGTACCTGTCCCAGAGTCACCCCGAAAACCGGAATGGTGCAG
Seq C2 exon
ATGACGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTCTTCAGTTTCCAGACAGCAACCACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.727 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAGGCCTGGGGATG
R:
GAACCAGGTACGGATGGGGA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development