HsaEX6064302 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140351859-140353786:-
Coord C1 exon
chr9:140353484-140353786
Coord A exon
chr9:140352940-140353001
Coord C2 exon
chr9:140351859-140352353
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTGTCCACCCTCAGAGC
3' ss Score
10.87
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGTTCGGGCAGCGCTCTCCCGGGAGCGGCGGCACGCGCGGAGCGCCGGGTGCGGCCATGCGGGGACCGGGCCCGACCCCGAGCCCGACCCCGAGCCCAAGCCCGAGCCGGAGCCCGAGCGAGACCCCGAGCCCGAGCCCGAGCGCGACCCCCGGTGCGGCGCGGCTACCCCGGCGGAGGCGGCGGGCGCGGGGCGCGCTCTGAGGCCCGGGGGATGCGCCGCCGCCTCGACCATGGGCGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTGGCGGCCAAAGTGCG
Seq A exon
AGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGCGCAG
Seq C2 exon
ATCACCTGCTGGCTGATGCCTACTCTGGCCACGACGGGTCCCCCGAGATGCAGCCGGCCCCCCAGAACAAGCGCCGCCTGTCCCTCGTCTCCAACGGCTGCTACGAGGGCAGCCTCTCAGAGGAGCCCAGCATTAGGAAGCCCGCAGGCGAGGGCCCTCAGCCTCGAGTGTACACCATCTCTGGGGAGCCTGCCCTGCTGCCCAGCCCTGAGGCGGAGGCCATTGAGCTGGCGGTGGTGAAGGGGCGGCGGCAGCGGCACCCTCACCATCACAGCCAGCCCCTGCGCGCCAGCCCTGGTGGCAGCCGGGAGGACGTCAGCAGGCCCTGCCAGAGCTGGGCGGGCAGCCGCCAGGGCTCCAAGGAGTGCCCCGGATGTGCCCAGCTGGCTCCTGGCCCCACCCCTCGGGCCTTTGGGCTGGACCAGCCACCTCTGCCTGAGACCTCCGGTCGCCGCAAGAAGCTGGAGAGGATGTACAGCGTTGACCGTGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
80%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.727 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGCGAGGCCATGTC
R:
CTCGTAGCAGCCGTTGGAGA
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)