RnoEX0061198 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2262253-2263992:+
Coord C1 exon
chr3:2262253-2262524
Coord A exon
chr3:2262861-2262922
Coord C2 exon
chr3:2263492-2263992
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGCCTACCCTGCAGAGC
3' ss Score
8.81
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCCCCCGGGTCCAGCCGCGCTCTCCTACAGTGGCTGGACGCGCTGGGCGCTGGGTGCGGCCATGCGGGGCCCGGGCCTAAGTGTGACCCTGACCCTGAGGCCAAGACCTAGCGCGACCTCAGGCACCGTACGGCTCCCCCGGCAGAGGCGGCGGGCGCGGGGCGCGCTCTGAAACCCGGGGGATGCGCGGGCGCCGTGACCATGGGTGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTAGCGGCCAAAGTAAG
Seq A exon
AGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAG
Seq C2 exon
ACCACCTGCTGGCCGACGCCTACTCTGGCCACGAAGGGTCCCCAGAGATGCAGCCTGCACCCCACAACAAGCGCCGCCTCTCCCTCGTCTCCAATGGCCGCTATGAGGGCAGCATCTCAGATGAGGCAGTCAGCGGGAAGACGGCTACAGAGGGCCCCCAGCCCCGTGTGTACACCATCTCTAGAGAGCCAGCCCTGCTGCCTGGCTCTGAAGCCGAAGCCATTGAGCTAGCAGTGGTGAAAGGGAGGAGGCAGCGGGAGCGGCACCCTCACCACCACAGCCAGCCCCTGCGCGCCAGCCCAGGCAGCAGCCGTGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCCAGGGCTCCAAAGAATGCCCCGGATGTGCCCAGCTGGTCCCTGGTCCCTCCCCTCGGGCCTTCGGGTTGGAACAGCCACCTCTACCTGAGGCTTCCGGCCGTCACAAGAAGCTGGAAAGGATGTATAGTGTTGATGGAGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.727 C2=0.940
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTAGCGGCCAAAGTAAG
R:
TCATCTGAGATGCTGCCCTCA
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]