MmuEX6099402 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25054355-25056136:+
Coord C1 exon
chr2:25054355-25054671
Coord A exon
chr2:25054998-25055059
Coord C2 exon
chr2:25055636-25056136
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGCTTACCATGCAGAGC
3' ss Score
8.15
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGGGGGTGGTGCCAACTCAGGCTCAGCGTCAGGAGGCGGAGCACCGCCCCCGGGTCCAGCCGCGCTCTCCTACAGTGGCTGGACGCGCTGGGCGCTGGGTGCGGCCATGCGGGGCCTGGGCCTAAGTCTGACCCTGACCCTGAGGCTGAGACCTAGCGCGACCTCAGGCGCCGTACGGCTCCCCCGGCAGAGGCGGCGGGCGCGAGGCGCGCTCTGAAATCCGGGGGATGCGCGGGCGCCGTGACCATGGGTGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTAGCGGCCAAAGTAAG
Seq A exon
AGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAG
Seq C2 exon
ACCACCTGCTGGCTGACGCCTACTCTGGCCACGACGGGTCCCCAGAGATGCAACCTGCACCCCAGAACAAGCGCCGCCTCTCCCTCGTCTCCAATGGCCGATATGAGGGCAGCATCTCAGATGAGGCAGTCAGCGGGAAGCCGGCTATAGAGGGCCCCCAGCCCCACGTGTACACCATCTCTAGAGAGCCCGCCCTGCTACCTGGCTCTGAAGCTGAAGCCATTGAGCTAGCAGTGGTAAAAGGGAGGAGACAGCGGGAACGGCACCCTCACCACCACAGCCAGCCCCTGCGTGCCAGCCCAGGCAGCAGCCGGGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCCAGGGCTCCAAAGAGTGCCCAGGATGTGCCCAGCTGGTCCCTGGTCCCTCTTCTCGGGCCTTTGGGCTGGAGCAGCCACCTCTACCTGAGGCTCCTGGCCGCCACAAGAAGCTGGAAAGGATGTATAGCGTTGATGGAGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-'0-3,'0-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.686 C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTAGCGGCCAAAGTAAG
R:
TCATCTGAGATGCTGCCCTCA
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types