DreEX0051901 @ danRer10
Exon Skipping
Gene
ENSDARG00000076748 | ntn2
Description
netrin 2 [Source:ZFIN;Acc:ZDB-GENE-050310-2]
Coordinates
chr24:38845550-38868747:-
Coord C1 exon
chr24:38867506-38868747
Coord A exon
chr24:38850209-38850397
Coord C2 exon
chr24:38845550-38845699
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGTTTCTTTATAGCGT
3' ss Score
11.13
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCGTCGCATGTATAACCGACCCAACAAAGCTGCAATCACTAAACAGAACGAGCAGGAGGCTTTATGCACAGACGGACACACTGATCTCTACCCGCTTTCTGGAGGTCTCATTGCGTTTAGTACATTGGACGGGCGCCCATCGGGGAAGGACTTTGACTCGAGTCCTGTGCTTCAGGATTGGGTGACGGTCACTGATATTCGGGTGGTGTTCAGTCGTCCGCAGCACACTAGAGCGCTGCCAATGTCAGGACGTGAAAGTGAAGACGCTCTCGGTGCGCCTGGAAGCTTGCCGACGTACTATTATGCGGTTGGTGACTTCCAAGTGGGCGGGAGGTGTAAATGCAATGGCCACGCCTCTAGGTGTGTCCGGGAGAAGGACGGGAAGCTGCTGTGTGAGTGCAAACACAACACTGAGGGTCCGGAGTGTGATCGATGTAAACCGTTTCATTATGACCGGCCCTGGCAGCGGGCGACAGGGAAAGAGGCCAACGAGTGCTTAC
Seq A exon
CGTGTAACTGTAACCTTCATGCGCGGCGCTGTCGCTTTAACATGGAGTTGTACAAGCTGTCAGGCCGAAAGAGTGGAGGAGTGTGTATGAACTGCAGACACAACACTGCTGGACGCCACTGCCATTACTGCAAAGAGGGATTCTATAGGGACATGGGCAAAGCCATCACACACCGACGGGCATGCAAAG
Seq C2 exon
CATGTGACTGCCATCCGGTGGGAGCTGCAGGTAAGACGTGTAACCAGACGACGGGTCAGTGCCCGTGTAAAGACGGAGTGACCGGCATCACCTGTAACCGCTGTGCTAAAGGCTATCAGCAGAGTCGATCGCCCGTCGCCCCGTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076748-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=70.6),PF0005319=Laminin_EGF=WD(100=15.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
ENSDART00000154461fB4360
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCTGTGTGAGTGCAAA
R:
GCGATCGACTCTGCTGATAGC
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]