GgaEX0013523 @ galGal3
Exon Skipping
Gene
ENSGALG00000009208 | NET3_CHICK
Description
NA
Coordinates
chr14:14770987-14782217:-
Coord C1 exon
chr14:14782004-14782217
Coord A exon
chr14:14776530-14776718
Coord C2 exon
chr14:14770987-14771136
Length
189 bp
Sequences
Splice sites
3' ss Seq
GACACTCTGCTCCTTTGCAGCCT
3' ss Score
8.38
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCACCCCCTACTACTACTCGGTGGGCGAGCTGCAGGTCGGCGGGCGCTGCAAGTGCAACGGGCACGCCTCGCGCTGCGTCAAGGACAAGGAGCAGAAGCTGGTGTGTGACTGCAAGCACAACACCGAGGGGCCCGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCGTGGCAGCGGGCCAGCGCCCGCGAGGCCAACGAGTGCCTGG
Seq A exon
CCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGCAAGGCCTGCAAAG
Seq C2 exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009208-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=75.0)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGTGTGTGACTGCAA
R:
GCTCTGCTGGAAGCCCTTG
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]